Showing : normalized counts • reset
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scran/scater Normalized matrix
scran scater normalized counts
updated 6.1 years ago by ★ 28k • written 6.1 years ago by ▴ 90
0
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2
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1.4k
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Get normalized COUNTS Deseq2
deseq2 normalized counts
updated 6.2 years ago by ★ 13k • written 6.2 years ago by • 0
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0
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1.6k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
6.4 years ago agdif ▴ 10
4
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2
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8.3k
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DESeq2 : normalized counts
rnaseq deseq2 normalized counts
updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 10
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14
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5.5k
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DESeq2 count normalization
deseq2 normalization normalized counts
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
1
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4
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1.8k
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Normalized counts after fitting linear model with batch effects - edgeR
edger batch effect normalized counts
updated 7.0 years ago by ★ 7.9k • written 7.0 years ago by • 0
4
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2
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1.5k
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Normalize to additional variable (brain weight) in DESeq2
deseq2 cqn normalization normalized counts
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
2
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1
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1.2k
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Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts grch37 grch38 r bioconductor
7.3 years ago salvocomplicazioni1 • 0
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2
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1.8k
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cn.MOPS - reporting log normalized read counts as table
cn.mops log normalized counts table
updated 7.5 years ago by ▴ 540 • written 7.5 years ago by • 0
1
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3
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1.6k
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DESeq2: Do basemean values take into account interaction effects?
deseq2 counts normalized counts
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 40
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2
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2.1k
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Analysis of shRNA screen data
shrna edger deseq2 differential expression normalized counts
8.5 years ago Jane Merlevede ▴ 90
1
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6
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3.1k
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Diffbind EdgeR and DESeq2 normalization
diffbind normalized counts
8.6 years ago GFM ▴ 20
12 results • Page 1 of 1
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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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