Bioconductor Normalized counts

Showing : normalized counts • reset

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1.4k

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scran scater normalized counts

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Radek ▴ 90

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1.4k

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deseq2 normalized counts

updated 6.2 years ago by Steve Lianoglou ★ 13k • written 6.2 years ago by anaQ • 0

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1.6k

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normalized counts log2

6.4 years ago agdif ▴ 10

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8.3k

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rnaseq deseq2 normalized counts

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by JoannaF ▴ 10

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deseq2 normalization normalized counts

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by naets_matthias • 0

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edger batch effect normalized counts

updated 7.1 years ago by Ryan C. Thompson ★ 7.9k • written 7.1 years ago by Yahan • 0

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deseq2 cqn normalization normalized counts

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by mark.ebbert • 0

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normalized counts grch37 grch38 r bioconductor

7.4 years ago salvocomplicazioni1 • 0

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1.9k

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cn.mops log normalized counts table

updated 7.6 years ago by Günter Klambauer ▴ 540 • written 7.6 years ago by falk.zakrzewski • 0

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1.6k

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deseq2 counts normalized counts

updated 8.6 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by snamjoshi87 ▴ 40

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2.1k

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shrna edger deseq2 differential expression normalized counts

8.6 years ago Jane Merlevede ▴ 90

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diffbind normalized counts

8.6 years ago GFM ▴ 20

12 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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